PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.260110.2
Common NameCsa_3G116640, LOC101219379
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 307aa    MW: 35016.9 Da    PI: 8.8066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.260110.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13105156155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ +++l+P++   + ++ + a+i   A++++k+L+
  Cucsa.260110.2 105 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YVQRGDQASIIGGAIDFVKELE 156
                     79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1596166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-8103153No hitNo description
PROSITE profilePS5088814.557104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-13105166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MLQSVESQSF KEPNFQSLLK LQHLTKPWEG GVNKIQELVQ LFSSPINSET KDQNQPPKSD  60
RVFSECNQNQ GISQTQMTKA PPVIKERRKR KRSKPTKNKE EVECQRMTHI AVERNRRRQM  120
NDHLNVIKSL IPTSYVQRGD QASIIGGAID FVKELEQLLE SLEALRKERK GAEGECKGEQ  180
SEVRVASNRR IGEGVCAELR SEVAEIEVTM IQTHVNLKIR CPKRQDQLLK VIVALEDLRL  240
TVLHLNITSQ TAATMLYSFN LKIEDECKLE SEEQIAATVN EIFSFINNGR LVNEAKENFR  300
QYSGSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691RRKRKR
28794RKRKRSKP
3105116RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134273.10.0PREDICTED: transcription factor bHLH67
SwissprotO810375e-75BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A0A0L6W20.0A0A0A0L6W2_CUCSA; Uncharacterized protein
STRINGVIT_15s0048g02510.t014e-96(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-70bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]